PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_48359.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 99aa    MW: 11243.2 Da    PI: 10.5385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_48359.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88e-081361654
                             HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             +N+ ++ Lr+llP++   + ++++ a+i+  A++Y+k L
  Rsa1.0_48359.1_g00001.1  1 MNEHINSLRSLLPPS---YVQRVDQASIVGGAINYVKVL 36
                             8**************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-10154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.382136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-5141No hitNo description
Gene3DG3DSA:4.10.280.109.8E-8150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MNEHINSLRS LLPPSYVQRV DQASIVGGAI NYVKVLEQVI QSLELQKRAQ QSSRVENRVT  60
CVPRIEATLI QNHVNLKVEC RKKQGQLLKG IVSLEKLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_48359.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490013.11e-61PREDICTED: transcription factor bHLH67
SwissprotQ700E42e-46BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A3P5YJS62e-56A0A3P5YJS6_BRACM; Uncharacterized protein
STRINGBra007644.1-P1e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.23e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]