PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_49772.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 152aa MW: 17363.4 Da PI: 8.9335

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_49772.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	2	24	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C ksF + L H+r+H Rsa1.0_49772.1_g00001.1 2 YKCRFCLKSFVNGRALGGHMRSH 24 9*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.1E-6	1	24	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.06E-5	1	26	No hit	No description
PROSITE profile	PS50157	10.076	2	24	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	4	24	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
YYKCRFCLKS FVNGRALGGH MRSHVPSFHK FSIQEEEGER ASQLNDETES DVSSSSSMMD 60 QKVANESETE SSSSMKITRK RSKRTRKLET FTTKKSKTSQ LGYKTEPECE PPHSSASDTT 120 RDKDLAFCLM LLSRDKWKNR TSSKEVVEEI ST

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_49772.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590771.1	6e-76	PREDICTED: zinc finger protein ZAT9-like
Swissprot	Q9M202	1e-49	ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBL	A0A0D3CV02	1e-74	A0A0D3CV02_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FVQ5	1e-74	A0A3P6FVQ5_BRAOL; Uncharacterized protein
STRING	Bo6g077190.1	2e-75	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-37	C2H2-like zinc finger protein