PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_53738.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 74aa    MW: 8156.9 Da    PI: 9.6618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_53738.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.58.5e-115474121
                             ---SS-EEEEEEE--TT-SS- CS
                     WRKY  1 ldDgynWrKYGqKevkgsefp 21
                             ldDgy+WrKYGqK+vk++ +p
  Rsa1.0_53738.1_g00001.1 54 LDDGYKWRKYGQKSVKNNAHP 74
                             59****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-114174IPR003657WRKY domain
SuperFamilySSF1182906.54E-94674IPR003657WRKY domain
PROSITE profilePS5081112.4844974IPR003657WRKY domain
PfamPF031069.4E-75574IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MSAQPENFQH AEGGGDAVEI GGLSDHNKNS KGKGKRSSAM QRIAFHTRSD DDVLDDGYKW  60
RKYGQKSVKN NAHP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_53738.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931631e-104KM593163.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY115) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454283.17e-48PREDICTED: probable WRKY transcription factor 56
SwissprotQ8VWQ48e-25WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A078GJZ71e-43A0A078GJZ7_BRANA; BnaC09g11790D protein
STRINGBra027675.1-P4e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.13e-22WRKY DNA-binding protein 56