PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_56238.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 74aa MW: 8130.92 Da PI: 9.0996

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_56238.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.1	1.4e-07	28	52	2	26
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 ek++sl+ l+++Fs+++kdAAk+Lg Rsa1.0_56238.1_g00001.1 28 EKSVSLSLLQQHFSGSLKDAAKSLG 52 799*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	2.4E-6	31	52	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
NSSTGSQATF EQDMSKARTP EKKRNSTEKS VSLSLLQQHF SGSLKDAAKS LGGDLSHYTK 60 KDMQTTWDHE VAVS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_56238.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434817.1	1e-25	PREDICTED: protein NLP8-like
Swissprot	O22864	2e-21	NLP8_ARATH; Protein NLP8
TrEMBL	M4CKN2	4e-21	M4CKN2_BRARP; Uncharacterized protein
STRING	Bra004767.1-P	7e-22	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	9e-24	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]