PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_57434.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 107aa    MW: 11845.3 Da    PI: 8.838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_57434.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-082348126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             yk +lC+ f  +  C+yG++C+F H+
  Rsa1.0_57434.1_g00001.1 23 YKGRLCNKFNSGEGCPYGESCTFLHD 48
                             899********66************7 PP
2zf-CCCH41.32.6e-1378103126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt++C+ +  +G+C++G +C+FaHg
  Rsa1.0_57434.1_g00001.1  78 WKTRICNKWEISGFCPFGTNCNFAHG 103
                              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-42249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-72249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6152250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-112349IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-62348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-974104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1376104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.81277105IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-677104IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-1078103IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
TVEDLRRPPP IRQETRGESG RPYKGRLCNK FNSGEGCPYG ESCTFLHDEV PRNRESFAIS  60
LGTRGGYGGN VVVVAPYWKT RICNKWEISG FCPFGTNCNF AHGASGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_57434.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9535568e-66EU953556.1 Zea mays clone 1434304 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434379.17e-64PREDICTED: zinc finger CCCH domain-containing protein 12
RefseqXP_018434380.17e-64PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM33e-28C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A078H4E65e-45A0A078H4E6_BRANA; BnaA05g08590D protein
STRINGBo4g038870.12e-45(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-30C3H family protein