PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_57915.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 131aa MW: 15678 Da PI: 8.2255

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_57915.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.6	8e-19	9	94	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +W+ ++v ++i+a ++++++ + ++k+ W++v+k++ erg+++sp+q ++k+++ nkrykk++e+ +++t +++ ++++++++++ Rsa1.0_57915.1_g00001.1 9 KWMVKMVELMITALSYLGDNDHKH-ARKGNWRSVAKVIDERGYHVSPQQYEDKFNDHNKRYKKLNEMIGRGTcCDVIENHALLHKID 94 7*************99886665.8999****************************************7689999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-15	8	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
KCCPRKLVKW MVKMVELMIT ALSYLGDNDH KHARKGNWRS VAKVIDERGY HVSPQQYEDK 60 FNDHNKRYKK LNEMIGRGTC CDVIENHALL HKIDYLDEKE KDEDTKLVRS KHLFYEEMCS 120 YLNENMLHLP H

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_57915.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189339	1e-121	AC189339.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104656.1	4e-63	PREDICTED: uncharacterized protein LOC103830595
Refseq	XP_013648723.1	4e-63	uncharacterized protein BNAA07G21220D
TrEMBL	A0A397YV49	1e-61	A0A397YV49_BRACM; Uncharacterized protein
TrEMBL	M4CHM1	1e-61	M4CHM1_BRARP; Uncharacterized protein
STRING	Bra003704.1-P	2e-62	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	9e-62