PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_59893.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 69aa    MW: 7565.63 Da    PI: 9.4585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_59893.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-081259550
                      AP2  5 GVrwdkk.rgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaar 50
                             GV+ dkk  g+WvAeIr+p + +g +  r +  +f ta eAa a+ +a+
  Rsa1.0_59893.1_g00001.1 12 GVF-DKKfGGKWVAEIREPAShRGGNlNRLWFRTFCTAAEAALAYGRAA 59
                             664.4431578*******988776567*****************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.851959IPR001471AP2/ERF domain
SMARTSM003800.0016969IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-71161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-111264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MQTRESSLSV LGVFDKKFGG KWVAEIREPA SHRGGNLNRL WFRTFCTAAE AALAYGRAAS  60
ATCMDAMHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_59893.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-07ERF family protein