PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_64834.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 115aa    MW: 13307.7 Da    PI: 6.7847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_64834.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-082988146
                             TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT...TTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...........tWktIartmg...kgRtlkqcksrwqk 46
                             r +WT+ +dell+ a     ++            Wk++a++ g   ++R   +cksrw+k
  Rsa1.0_64834.1_g00001.1 29 RRKWTPFDDELLISAWLNTSKDavvgndqksltFWKRVAEYYGesaEKRPHQHCKSRWHK 88
                             679*****************99************************99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0272490IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-52988IPR009057Homeodomain-like
PfamPF002491.7E-52988IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
QPSEIPLFSS QQSEAPSQPD DIVVERQERR KWTPFDDELL ISAWLNTSKD AVVGNDQKSL  60
TFWKRVAEYY GESAEKRPHQ HCKSRWHKIN KLTNKFCGAF ALAERQQSSG QNDND
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_64834.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453844.13e-76PREDICTED: glutathione S-transferase T3-like
TrEMBLA0A0D3CLW32e-51A0A0D3CLW3_BRAOL; Uncharacterized protein
STRINGBo5g139980.13e-52(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2225