PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_65621.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 100aa    MW: 11504.8 Da    PI: 7.6191
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_65621.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.6e-066888323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C  Cgk F+++  L  H+ +H
  Rsa1.0_65621.1_g00001.1 68 CRECGKGFPSSKALCGHMASH 88
                             99*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.63E-56392No hitNo description
PROSITE profilePS5015710.4716693IPR007087Zinc finger, C2H2
PfamPF139128.7E-66790IPR007087Zinc finger, C2H2
PROSITE patternPS0002806788IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-46890IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
THMSNKNTAD SDEDDEHNKL VIDENGGQSS YGLRENPKKN KRFVDQREMM ALKHQQHQHQ  60
HQQRLLCCRE CGKGFPSSKA LCGHMASHSE REKIVMDSQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_65621.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934808e-72AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026848e-72CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K78e-72AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437727.13e-66PREDICTED: uncharacterized protein LOC108810094
TrEMBLA0A078G5F74e-53A0A078G5F7_BRANA; BnaC07g12310D protein
TrEMBLA0A0D3D6U04e-53A0A0D3D6U0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ETC94e-53A0A3P6ETC9_BRAOL; Uncharacterized protein
STRINGBo7g054120.17e-54(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-40C2H2-like zinc finger protein