PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_69205.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 110aa MW: 11895.4 Da PI: 7.5073

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_69205.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF + L H +H Rsa1.0_69205.1_g00001.1 81 YQCKTCDKSFHSFQALGGHRTSH 103 9*********9888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.35E-6	79	107	No hit	No description
Pfam	PF13912	4.3E-12	80	105	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.575	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
AEAMSSVCNE ERSLEAREEG ADEIKFLGAT DEDQDMANCL MLLSKGHKSK GSGDHLSTQK 60 IGFLSDKKPV TPLGLGRDGV YQCKTCDKSF HSFQALGGHR TSHKKPKLGA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_69205.1_g00001.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232522	1e-117	AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475119.1	1e-75	PREDICTED: zinc finger protein ZAT5-like
Refseq	XP_018475984.1	1e-75	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A3P5ZUB6	6e-60	A0A3P5ZUB6_BRACM; Uncharacterized protein
STRING	Bo3g002370.1	2e-60	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6347	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	6e-55	C2H2 family protein