PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_75077.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 101aa    MW: 11312.1 Da    PI: 5.5956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_75077.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS58.41.5e-181100126217
                     GRAS 126 paLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp...gEal 202
                              p+L++a+as+ + pp l++T+v+sp+s+    + ++ee+g++L +fA++ +++++f+++   +++ +++l l++Lr+ +   +Eal
  Rsa1.0_75077.1_g00001.1   1 PTLIDAMASKLNTPPLLKLTVVSSPSSFpplINISYEELGSKLVNFATTRNIEMQFTIIpstYSDGFSSL-LQHLRIYStsyNEAL 85 
                              79*************************999999*************************988666677777.99999888889**** PP

                     GRAS 203 aVnlvlqlhrlldes 217
                              +Vn++++l +++de+
  Rsa1.0_75077.1_g00001.1  86 VVNCHMMLRYIPDET 100
                              ***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.9391101IPR005202Transcription factor GRAS
PfamPF035145.3E-161100IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
PTLIDAMASK LNTPPLLKLT VVSSPSSFPP LINISYEELG SKLVNFATTR NIEMQFTIIP  60
STYSDGFSSL LQHLRIYSTS YNEALVVNCH MMLRYIPDET L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_75077.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437964.12e-65PREDICTED: scarecrow-like protein 32
SwissprotQ9SN226e-54SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A397XZB37e-59A0A397XZB3_BRACM; Uncharacterized protein
STRINGBra036041.1-P6e-58(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-56GRAS family protein