PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_76544.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 71aa    MW: 7893.95 Da    PI: 8.1184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_76544.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.52.2e-13730326
                             S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                             +++Crff+ tGtCkyGd Ck++H+
  Rsa1.0_76544.1_g00001.1  7 RAECRFFMSTGTCKYGDDCKYSHP 30
                             899********************8 PP
2zf-CCCH36.11.1e-114369127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ++++ C +f ++G+CkyG++Ck+ H++
  Rsa1.0_76544.1_g00001.1 43 PGQPACGNFKAYGFCKYGSNCKYDHPM 69
                             5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.929432IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-8531IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-7730IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-11730IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-71029IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-74168IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5114270IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-94469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-44867IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
PDSSSERAEC RFFMSTGTCK YGDDCKYSHP NLTHPIVVLP ARPGQPACGN FKAYGFCKYG  60
SNCKYDHPMP L
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_76544.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472932.12e-45PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487723e-31C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A397ZWR33e-35A0A397ZWR3_BRACM; Uncharacterized protein
TrEMBLM4E2B93e-35M4E2B9_BRARP; Uncharacterized protein
STRINGBra022919.1-P6e-36(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-33zinc finger nuclease 2