PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000006-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 187aa    MW: 19855.3 Da    PI: 5.0278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000006-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-162573255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+G+r ++ +g+Wv+eIr p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  SMil_00000006-RA_Salv 25 TYRGIR-CR-SGKWVSEIRKPRQ---TARIWLGTYPTPEMAAAAYDVAALALRG 73
                           69***9.55.6*********943...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-262581IPR001471AP2/ERF domain
PfamPF008472.2E-102573IPR001471AP2/ERF domain
SMARTSM003802.0E-262587IPR001471AP2/ERF domain
PROSITE profilePS5103219.7962581IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-182581IPR016177DNA-binding domain
PRINTSPR003672.6E-62637IPR001471AP2/ERF domain
CDDcd000182.80E-152681No hitNo description
PRINTSPR003672.6E-66383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAAEDGSLPP PAAAAASPRS GRHPTYRGIR CRSGKWVSEI RKPRQTARIW LGTYPTPEMA  60
AAAYDVAALA LRGPEAMINF PGLAPTYPMP ASFSDDDIRA AAAASASAIA PRNAGPGRQA  120
QPPAGEASSS SSQAHEFVDE EALFGMPKLL DDMAQGMLVS PPRMKPAAED EESPEDYSKN  180
DSLWKYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1223811272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076239.27e-75LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF025
SwissprotQ9FJ904e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A4D9ARQ72e-79A0A4D9ARQ7_SALSN; Uncharacterized protein
STRINGMigut.F00381.1.p6e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-45ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]