PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000085-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 203aa    MW: 21828.2 Da    PI: 8.9651
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000085-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.63.1e-3121122197
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlrr+C+++C+l+p++     p++q++++ +v k+FG+s ++ +++a+p+++r+++++sl++eA+ r+ +Pv+Gavg+++++
  SMil_00000085-RA_Salv  21 SCNGCRVLRRGCSDQCILRPCLewiqsPQAQANATLFVSKFFGRSDLMTFIAAVPQSKRPALFQSLLFEACGRTVNPVNGAVGLLSTG 108
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelall 97 
                            +++++q++++++l+
  SMil_00000085-RA_Salv 109 NWHICQAAVDTVLA 122
                            *******9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.36220126IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-2721120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
LKKSNKIGEK RVFPGIWRKM SCNGCRVLRR GCSDQCILRP CLEWIQSPQA QANATLFVSK  60
FFGRSDLMTF IAAVPQSKRP ALFQSLLFEA CGRTVNPVNG AVGLLSTGNW HICQAAVDTV  120
LAGGVPSPVA NPPSVDRVMQ RCFVVGESSG AGIINCMEMT ASGISELSPE SGNGESGVNQ  180
VVTRGQSCST FLLNHRLCLH NKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074366.25e-70LOW QUALITY PROTEIN: LOB domain-containing protein 38-like
SwissprotQ9SN239e-57LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2G9HX531e-68A0A2G9HX53_9LAMI; Uncharacterized protein
STRINGVIT_18s0001g09250.t017e-62(Vitis vinifera)
STRINGXP_008393744.17e-62(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-59LOB domain-containing protein 38