PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000148-RA_Salv
Common NameMYB89
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 224aa    MW: 25421.7 Da    PI: 7.592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000148-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88e-161260148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W+++Ed  l d+v+++G+  +W + +++ g++R++k+c++rw++yl
  SMil_00000148-RA_Salv 12 RGPWSPQEDSTLRDYVEKHGTAgSWISLPQKAGLKRCGKSCRLRWLNYL 60
                           89******************99*************************97 PP
2Myb_DNA-binding41.53.1e-1367109246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +T +Ed +++ + +  G++ W+ Ia+ ++ gRt++++k++w++
  SMil_00000148-RA_Salv  67 GGFTHQEDTIILALYHNIGSR-WSVIASQLP-GRTDNDVKNYWNT 109
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.092764IPR017930Myb domain
SuperFamilySSF466891.54E-2610107IPR009057Homeodomain-like
SMARTSM007171.8E-101162IPR001005SANT/Myb domain
PfamPF002497.4E-151260IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-231367IPR009057Homeodomain-like
CDDcd001672.51E-81460No hitNo description
SMARTSM007172.8E-1165113IPR001005SANT/Myb domain
PROSITE profilePS5129415.29965115IPR017930Myb domain
PfamPF002496.8E-1267109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2368115IPR009057Homeodomain-like
CDDcd001678.73E-969111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
RAPCCDKSKV KRGPWSPQED STLRDYVEKH GTAGSWISLP QKAGLKRCGK SCRLRWLNYL  60
RPNIKHGGFT HQEDTIILAL YHNIGSRWSV IASQLPGRTD NDVKNYWNTK LKKKLATNHL  120
AAAAATINSN MLPYFPFDAN SYQHSQIPLP ALVEAPENAL LPSAPATLSP PFINADGSCE  180
EDAFLLDFMP NYDLLDAFDF HDKFNHQIDY HLQQEQPIYQ SFTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121177110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594430.0KF059443.1 Salvia miltiorrhiza MYB-related transcription factor (MYB89) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078220.11e-84transcription factor RAX2
SwissprotQ9FKL29e-68MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A059PRF51e-168A0A059PRF5_SALMI; MYB-related transcription factor
STRINGXP_009799606.11e-73(Nicotiana sylvestris)
STRINGGSMUA_Achr1P04910_0014e-74(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-64myb domain protein 36
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]