PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000198-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 333aa    MW: 38657.5 Da    PI: 5.3886
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000198-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34441352102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k++++++d ++++++sws+ g+sfvv+d+  f++ +Lp yFkh+nf+SFvRQLn+YgFkk+++e+         weF++++F +g
  SMil_00000198-RA_Salv  44 FLTKTFDMVDDFTTSHIVSWSRGGRSFVVWDPIAFSSMLLPAYFKHNNFSSFVRQLNTYGFKKIDSEK---------WEFANEEFLRG 122
                            9***************************************************************9998.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll+ki+r+k 
  SMil_00000198-RA_Salv 123 EKHLLKKIRRRKA 135
                            ***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3240133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5340133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MKSRFPIKEE DVFGSSSNSW QHDEPDSVAP RPMEGLHEAG PPPFLTKTFD MVDDFTTSHI  60
VSWSRGGRSF VVWDPIAFSS MLLPAYFKHN NFSSFVRQLN TYGFKKIDSE KWEFANEEFL  120
RGEKHLLKKI RRRKAATAAA PPPPQSAVEL GRFGQDCEAE RLRRDKHVLM MELLKLRQQQ  180
QNNRLYLQQI EQRLQGTEKK QQQMMRFLAK AMQNPDFVNQ LARQRERRED LEEDACKKRP  240
RPIEDAGTSR NDSGLNTDVK VEFDEDLCGF QMSELEALAL QMQRLGKAKP GQSSNFEQLA  300
SYDRELDEGF WEDLLKQGFD EGEKLVKDED AEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-213913812125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079918.11e-134heat stress transcription factor A-7a
SwissprotQ9LUH81e-104HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A4D9BR341e-155A0A4D9BR34_SALSN; Heat shock transcription factor, other eukaryote
STRINGPGSC0003DMT4000497931e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-88heat shock transcription factor A6B