PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000332-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 698aa    MW: 76989.4 Da    PI: 7.2277
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000332-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23112213199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++v
  SMil_00000332-RA_Salv 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIV 197
                            89*****************************97656666..699******************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   + +++ l+v+++r+
  SMil_00000332-RA_Salv 198 FL--RAENGDLCVGIRRA 213
                            **..4488999****997 PP
2Auxin_resp115.45e-38273353483
             Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+++++FevvY+Prast+eF+v++++v++a++v++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  SMil_00000332-RA_Salv 273 LAANGQPFEVVYYPRASTPEFCVRASSVSAAMRVQWCAGMRFKMPFETEDSSRISWfMGTIASVQVVDPLRWPNSPWRLLQ 353
                            6899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-38103216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29105215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-21111212No hitNo description
SMARTSM010194.7E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126112214IPR003340B3 DNA binding domain
PfamPF023627.7E-22112213IPR003340B3 DNA binding domain
PfamPF065077.8E-33273353IPR010525Auxin response factor
PROSITE profilePS5174520.126586666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MKEVGERSLD SELWHACAGG MVQMPPVNSK VFYFPQGHAE HTLTTVDFGA LPKFPPMILC  60
RVAAVKYLAD PDTDEVYAKI RLIPVGKNEH GFDDNGLPGN NGSASNEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ NVIAKDVHGE TWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRSGVGN EPSSGWNSGG AGNFGFSSFL  240
KEDESRLIHR VGSGNLREKG KVRPESVVEA TFLAANGQPF EVVYYPRAST PEFCVRASSV  300
SAAMRVQWCA GMRFKMPFET EDSSRISWFM GTIASVQVVD PLRWPNSPWR LLQVTWDEPD  360
LLQNVKCVSP WLVEMVSNMP TILHLSPFSP PRKKLRLPQH PDFSLDGQFP MPSFSGTPLG  420
PSSPLCLSDN ITAGIQGARH AQMGIPLSDL HLSNKLQMGL LPPSFLRLDP HAKIPNRMAR  480
SHVDCNENIS CLLSMGSGTQ KLEKTDDVKT PRFVLFGQPI LTEQQMSSDC SSEVASKVTE  540
EKISSGGTAW KNGSFALDCE DLPKNLAGSQ FLWKQGYHAS DLSLDTGHCK VFLESEDVGR  600
TLDLSVLGSY EELYKRLEDM FGIERSEMLS HVYYRDAAGA VKQAGDEPFS EFVKTAKRLT  660
ILMKPSNNNT ERKFITGLPT AERGLDSSNQ AGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-83937451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367210.0KX036721.1 Salvia miltiorrhiza auxin response factor ARF1 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089288.10.0auxin response factor 18 isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_009797612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]