PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000347-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 161aa    MW: 17867.6 Da    PI: 5.8977
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000347-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.2e-42201201101
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C ++Cvlapyfp ++p kf  +h++FGasn++k+l+++pe +reda+ss+vyeA+ar+rdPvyG++g i +lq+q++
  SMil_00000347-RA_Salv  20 PCAACKILRRRCIEKCVLAPYFPPHDPLKFTTAHRVFGASNIIKFLQEVPEAQREDAVSSMVYEANARLRDPVYGCAGAICHLQKQVA 107
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkeel 101
                             l+++la++++++
  SMil_00000347-RA_Salv 108 DLQEQLAKAQAQI 120
                            *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.0219120IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-4320117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEGSDSTSSQ SPSPSVVMSP CAACKILRRR CIEKCVLAPY FPPHDPLKFT TAHRVFGASN  60
IIKFLQEVPE AQREDAVSSM VYEANARLRD PVYGCAGAIC HLQKQVADLQ EQLAKAQAQI  120
VNMQCHHSNL MALICMDMDM DDFSCSPHTD TNNLLDPLWI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-43111252116LOB family transfactor Ramosa2.1
5ly0_B2e-43111252116LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597159.14e-78LOB domain-containing protein 1
RefseqXP_017246117.16e-78PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR04e-67LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2G9GMD14e-78A0A2G9GMD1_9LAMI; Uncharacterized protein
STRINGAES674101e-77(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-65LOB domain-containing protein 1