PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000467-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 190aa    MW: 20755.7 Da    PI: 8.4967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000467-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002580102123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C +C++ F ++  L  H++ H
  SMil_00000467-RA_Salv  80 FSCLYCNRKFCTSQALGGHQNAH 102
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.01E-677107No hitNo description
PROSITE profilePS5015711.03280107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MADPSTYDFF KLNTHPSNKL NPPSNSCSNS RLFSCLYCXL SHLRTTSMAD PSTYDFFKLN  60
THPSNKLNPP SNSCSNSRLF SCLYCNRKFC TSQALGGHQN AHKRERAATR RNLAAGDAVS  120
RPHSHPPAAA ASFELNSPPP PSYGHWLQQS LDDGSSSAPL AVFGGGRSIS ERFSVDDSGD  180
NVNLDLTLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844085.19e-53PREDICTED: zinc finger protein 4
TrEMBLA0A4D9BDZ85e-68A0A4D9BDZ8_SALSN; Uncharacterized protein
STRINGMigut.F00027.1.p4e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.13e-16C2H2 family protein