PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000585-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 353aa    MW: 39380.6 Da    PI: 9.7833
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000585-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-124197155
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                           s+y+GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  SMil_00000585-RA_Salv 41 SKYRGVSRHRWTGRYEAHLWDkLSWNIsqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 97
                           89*******************88887784446666.99***9**************98 PP
2AP226.91.2e-08140173137
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                            s+y+GV +++ +grW+A+I   +   g +k+ +lg++ 
  SMil_00000585-RA_Salv 140 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYS 173
                            89****99**********99966...3.6*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-1541107IPR016177DNA-binding domain
PfamPF008476.0E-94197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-1342106IPR001471AP2/ERF domain
SMARTSM003802.5E-1842111IPR001471AP2/ERF domain
PROSITE profilePS5103218.53142105IPR001471AP2/ERF domain
PRINTSPR003673.9E-54354IPR001471AP2/ERF domain
PRINTSPR003673.9E-587107IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-5140174IPR016177DNA-binding domain
PfamPF008471.1E-4140172IPR001471AP2/ERF domain
PROSITE profilePS510328.768141173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-4141174IPR001471AP2/ERF domain
SMARTSM003800.058141178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
APCGHARGHT RVKRRRRDAA EPKQEAASAA AVAPTTVKRS SKYRGVSRHR WTGRYEAHLW  60
DKLSWNISQK KKGKQGAYDD EEAAARAYDL AALKYWGTST FTNFPISDYE AEIGVMQTMT  120
KEEYLASLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYSKLSSSYP  180
FIKSILEIMV LKMSVSIHCR WLKPGANAPV AAAQDMKTGM DLPPLAPTYM AREEFQSLSP  240
CLKRKAFSAE DLQESFSCKN PVSPCSKPSP TALSLLFRSS LFRELLEKNS NVSEEGIQDG  300
NTQYEMRVDS GDGYGGMFSN GSGDIPFVLS ANGHTIELQG QLNLEYGCPD SIF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098579.11e-142AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A4D9B4480.0A0A4D9B448_SALSN; AP2-like factor, ANT lineage
STRINGMigut.H00893.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-59AP2 family protein