PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000592-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24371.9 Da PI: 8.1042

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000592-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.4e-18	72	126	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q ++Le+ F +n+ ++ +e+e LA +l+L+ rqV vWFqNrRa+ k SMil_00000592-RA_Salv 72 RKKLRLTKDQSRRLEQSFLQNQALNPKEKEALAVELRLKPRQVEVWFQNRRARSK 126 78889************************************************98 PP
2	HD-ZIP_I/II	108.4	5e-35	72	159	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k+q++ LE+sF +++ L+p++K++la eL+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ al+e+n++L+keveeLr SMil_00000592-RA_Salv 72 RKKLRLTKDQSRRLEQSFLQNQALNPKEKEALAVELRLKPRQVEVWFQNRRARSKMKQTEIECEYLKRWLGALTEQNRKLQKEVEELR 159 69*************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-19	47	129	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.23E-19	61	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	68	128	IPR001356	Homeobox domain
SMART	SM00389	2.1E-15	70	132	IPR001356	Homeobox domain
CDD	cd00086	3.50E-16	71	126	No hit	No description
Pfam	PF00046	9.0E-16	72	126	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	103	126	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.2E-7	128	159	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.3E-16	128	171	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
LFADFMEILN PNSTCLELSI AMPGFSSSPS SSEAKGEMKL LDMNEAPSRS EEECVEEEDE 60 DCPYGGGGPI PRKKLRLTKD QSRRLEQSFL QNQALNPKEK EALAVELRLK PRQVEVWFQN 120 RRARSKMKQT EIECEYLKRW LGALTEQNRK LQKEVEELRF IKAAPPPRQV SALTMCPRCE 180 RTTLLDKGRA TTAAASEGKV PFLRHSSDPL VIYK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRARSKMKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070725.1	2e-74	homeobox-leucine zipper protein HOX3
Swissprot	Q8S9N6	2e-64	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	D7T8T6	2e-70	D7T8T6_VITVI; Uncharacterized protein
STRING	VIT_01s0011g04870.t01	3e-71	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-60	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]