PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000601-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 230aa    MW: 26094.4 Da    PI: 9.8249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000601-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002179101123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kCp C k+F ++  L  H++ H
  SMil_00000601-RA_Salv  79 FKCPCCLKVFANSQALGGHQNAH 101
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.28E-676106No hitNo description
Gene3DG3DSA:3.30.160.602.3E-477105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.28179106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGKNSVSISN SEKKLKLFGV ELDPSRPQST DRASVEDGDE SVSSSSPSST VSEKPFVGET  60
RGFREEPPPP SPPRPPKKFK CPCCLKVFAN SQALGGHQNA HKNERMRQKR LQLQLQLQER  120
KATNNLNYYY INNPIFNKFC DKNSENLVNF CGPTKPALFN KEVQINFGSD MINYDHKIYR  180
CNNYYMQQNK HRFSVTQVEG SRRNSSPSTP ESKRICSRKG LELDLQLGLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109RMRQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087078.11e-36zinc finger protein 5
TrEMBLA0A4D9A9X73e-52A0A4D9A9X7_SALSN; Uncharacterized protein