PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000662-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 267aa MW: 30007.1 Da PI: 10.0669

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000662-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.8e-33	64	118	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk+++++m++kgLtl+h+kSHLQkYRl SMil_00000662-RA_Salv 64 KPRLRWTADLHDRFVDAVTKLGGPHKATPKSVMRVMGLKGLTLYHLKSHLQKYRL 118 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-31	61	121	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.649	61	121	IPR017930	Myb domain
SuperFamily	SSF46689	1.16E-15	64	121	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-24	64	119	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-8	66	117	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-22	157	202	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAVPSLKDVA RDHRNIRVLT SAGGDSALPY TCPHIYTVHR SHRRTFPTPR VGGSGGVVLT 60 RDPKPRLRWT ADLHDRFVDA VTKLGGPHKA TPKSVMRVMG LKGLTLYHLK SHLQKYRLGQ 120 QHAKQHTNTD NFENPYMHIA STSTNSSSMN SEQGEIPVAE AVRCQIEVQK TLEEQLEVQK 180 KLQMRIEAQG KYLQAILERA HRSLSESAKA QLTTDFNLAL SSFMHTVNEE PRDTKLVLKL 240 EGPSIDFDLN SRSSYDFIGT SKSMNLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-19	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854303.1	1e-101	PREDICTED: myb family transcription factor APL
Swissprot	C0SVS4	1e-69	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A4D9BJZ5	1e-123	A0A4D9BJZ5_SALSN; Uncharacterized protein
STRING	Migut.A00576.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	4e-66	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]