PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000702-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 230aa MW: 24551.9 Da PI: 8.4739

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000702-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.4e-42	47	146	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq++ SMil_00000702-RA_Salv 47 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPEAQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQ 134 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 +l+ael+++++e SMil_00000702-RA_Salv 135 TLQAELNAVRAE 146 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.03	46	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-42	47	144	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSREREGVGE IGKKLKTEID GSSPSASVSM GRRHVFGPPG SLNTITPCAA CKLLRRRCAE 60 ECPFSPYFSP HEPHKFAAVH KVFGASNVSK MLMEVPEAQR ADAANSLVYE ANVRLRDPVY 120 GCMGAISALQ QQIQTLQAEL NAVRAEILRY KYREAANSII ASTNAALAVS VAELPQAPPT 180 PTPSQPAPVA APPPPSIVIT STSSAPSLYT SPSSTASYTS ITNNHIPFFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	47	154	11	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	47	154	11	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839914.1	1e-113	PREDICTED: LOB domain-containing protein 15
Swissprot	Q9AT61	2e-80	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A4D8YJA1	1e-129	A0A4D8YJA1_SALSN; Uncharacterized protein
STRING	Migut.N00746.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-80	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]