PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000739-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 142aa    MW: 15764.7 Da    PI: 6.5361
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000739-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-15956249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            i+++s+r++tf+kRr+g++KKAeE +   d  + ++ifss+ + y +
  SMil_00000739-RA_Salv  9 LIDDNSKRHTTFTKRRKGLMKKAEEFCRKSDSTAMLLIFSSSKNCYGF 56
                           69***************************************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.119160IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-17159IPR002100Transcription factor, MADS-box
CDDcd002664.34E-21169No hitNo description
SuperFamilySSF554558.5E-20271IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-11222IPR002100Transcription factor, MADS-box
PfamPF003191.5E-141056IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-112237IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-113758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MRRRIEIKLI DDNSKRHTTF TKRRKGLMKK AEEFCRKSDS TAMLLIFSSS KNCYGFGHPE  60
IDYVLDRYEA DSSSAEAGTS AAGAVTEMET RIGDAVESGR WEEAVRGLGF DAFDQLTAEL  120
ENIRRQVAAL QTKFAAEGTG GS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9A6V53e-40A0A4D9A6V5_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.12e-15AGAMOUS-like 23