PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000822-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 209aa    MW: 22766.5 Da    PI: 7.7621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000822-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82.1e-164896255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+G+r  +++g+Wv+eIr+p++   ++r++lg++ ++e+Aa+a++ a+++l+g
  SMil_00000822-RA_Salv 48 IYRGIR--SRSGKWVSEIREPRK---TRRVWLGTYPSPEMAAAAYDVAALALKG 96
                           69***6..678*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-104796IPR001471AP2/ERF domain
CDDcd000183.98E-1547106No hitNo description
SMARTSM003803.8E-2648110IPR001471AP2/ERF domain
PROSITE profilePS5103219.98148104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2548106IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1748105IPR016177DNA-binding domain
PRINTSPR003673.8E-64960IPR001471AP2/ERF domain
PRINTSPR003673.8E-686106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MADSPRHSQQ RHPSSPTPLP PLAPSPKRAE KATKTCSAAS SSSGKHPIYR GIRSRSGKWV  60
SEIREPRKTR RVWLGTYPSP EMAAAAYDVA ALALKGGGAA LNFPDHAASF PVPYSSSAQD  120
IRRAAAAAAE LMRPDDERRR SDETAANVEM VRSGGGGHDQ YVDEEELFYM PNLLVDMAEG  180
MLVSPPRMAS PPPNEWPEIF GGDSLWNHF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072131.12e-65ethylene-responsive transcription factor ERF027
SwissprotQ9FJ907e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A4D8YZ526e-77A0A4D8YZ52_SALSN; EREBP-like factor
STRINGVIT_16s0100g00400.t012e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-39ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]