PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000852-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YA
Protein Properties Length: 273aa    MW: 30985.4 Da    PI: 8.0025
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000852-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.24.9e-32151207158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq Rak+e e+kl ++ rkpylheSRh hAlrR+Rg+gGrF
  SMil_00000852-RA_Salv 151 EEPVYVNAKQYHAILRRRQLRAKAEMENKL-TRVRKPYLHESRHLHALRRARGCGGRF 207
                            69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-35149210IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.622150210IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.4E-27152207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-23153175IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860155175IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.6E-23184207IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQQHGDKREQ CEFDTKGYNL HEAGSQGWHY GVGDNYVPAN VLSRTMLSMT NSPNQLHSQF  60
RGQIPEMPDS VCSQENRKAS PIPVVPSTMG EYIVHENQRD QIGSSKEISA YSYLEPELRD  120
NTQAHGRQEL IYPELHPAPH CGTTLPFVQP EEPVYVNAKQ YHAILRRRQL RAKAEMENKL  180
TRVRKPYLHE SRHLHALRRA RGCGGRFINT KKSNGAHEEG SSTGDSTPAP SPESDYTSGL  240
VQPVMRRDQY GGRLSHHEET HGATFFHWTC QSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20151217268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075221.11e-80nuclear transcription factor Y subunit A-1-like
TrEMBLA0A4D9BFV31e-147A0A4D9BFV3_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2042633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-32nuclear factor Y, subunit A7