PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000975-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 208aa MW: 21938.6 Da PI: 8.2351

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000975-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF + L H r+H SMil_00000975-RA_Salv 136 HECSICHKSFATGQALGGHKRRH 158 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.3E-7	87	103	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.66E-6	133	160	No hit	No description
PROSITE profile	PS50157	9.723	136	158	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.3E-12	136	160	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MALDTLNSSV AVAPLKPSRR FDDIDPSRAS LQWPKNKRSK RLITRDQSED EYLALCLVML 60 ARSDGARSPA AAGTVSPPAA DSPITCVFPS YQALGGHKAS HRAKPPAATA VASDESNQSA 120 AAANHVSALN PSGRLHECSI CHKSFATGQA LGGHKRRHYE GVIGGSAAKS RTTSSNGGIV 180 RNFDLNMTPP PELQCDEEVE SALPPLSD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088065.1	2e-69	zinc finger protein AZF2-like
TrEMBL	A0A4D9BGD6	1e-80	A0A4D9BGD6_SALSN; Uncharacterized protein
STRING	Migut.B00436.1.p	7e-57	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA735	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	7e-34	zinc-finger protein 2