PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000994-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 175aa    MW: 19856.4 Da    PI: 9.0543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000994-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.6e-063658123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C+k F++   L  H+++H
  SMil_00000994-RA_Salv 36 YRCSFCNKEFKSAQALGGHMNVH 58
                           9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-53361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.73E-73363No hitNo description
PfamPF139121.1E-73659IPR007087Zinc finger, C2H2
SMARTSM003556.3E-43658IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.7593663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEKYSKWACD QRLKDGTNLS FERDRAYGFS WPQRNYRCSF CNKEFKSAQA LGGHMNVHRR  60
DRARMRLSPS PNPNPNPNPN PNPSFSLSTS TPKLLPCNVA CLSLINSPSP PPLQEDDFTA  120
IRRSSPCLAR EDLGKYKNHG FATRNDVIRL DLSLGLIQDA NKDLDLDLEL RLGYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080293.17e-48transcriptional regulator SUPERMAN-like
TrEMBLA0A4D9A0822e-74A0A4D9A082_SALSN; Uncharacterized protein
STRINGMigut.D00403.1.p1e-28(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-21C2H2 family protein