PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001041-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 180aa MW: 20812.7 Da PI: 6.5186

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001041-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.5	5.9e-41	18	139	2	126
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pGfrF Pt+eelv++yL++k++g++le+ ++ i+ +diy+++PwdLp e+++w+fFs+r+ +g r++r t++gyWkatg+ SMil_00001041-RA_Salv 18 LPGFRFYPTEEELVSFYLHHKLSGTRLEEIDTlIPLLDIYQYNPWDLPLG--LESEQWFFFSQREA---RGGRPSRLTSEGYWKATGS 100 69**********************8876766***********54..4779**9976...589************ PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126 +v+s+ +g+++g k+t+vfy grap+g+kt W m+ey SMil_00001041-RA_Salv 101 PGDVYSShNGSVIGRKRTMVFYVGRAPNGTKTPWKMNEY 139 *9978899************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-41	12	146	IPR003441	NAC domain
PROSITE profile	PS51005	43.11	17	180	IPR003441	NAC domain
Pfam	PF02365	1.0E-21	19	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MQNDSHTQLN NMDAIATLPG FRFYPTEEEL VSFYLHHKLS GTRLEEIDTL IPLLDIYQYN 60 PWDLPLGLES EQWFFFSQRE ARGGRPSRLT SEGYWKATGS PGDVYSSHNG SVIGRKRTMV 120 FYVGRAPNGT KTPWKMNEYL PPPNSQPQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-31	5	139	2	140	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-31	5	139	2	140	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-31	5	139	2	140	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-31	5	139	2	140	NO APICAL MERISTEM PROTEIN
4dul_A	6e-31	5	139	2	140	NAC domain-containing protein 19
4dul_B	6e-31	5	139	2	140	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022842757.1	3e-56	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	5e-44	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2G9GF50	8e-54	A0A2G9GF50_9LAMI; Uncharacterized protein
STRING	XP_004143387.1	1e-51	(Cucumis sativus)
STRING	XP_004171607.1	1e-51	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-46	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]