PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001046-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 378aa    MW: 40367.7 Da    PI: 9.3393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001046-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15215260555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  SMil_00001046-RA_Salv 215 HNQSERKRRDKINQRMKTLQKLVPNS-----SKSDKASMLDEVIEYLKQLQ 260
                            9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.504210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19213283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18215268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-17215264No hitNo description
PfamPF000105.8E-13215260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGEWSARHAW PGVPRVVNKP SASSPPSTWD KPRASGTLES IVNQATSLGE KESELGGHRA  60
KANPAAVAMD ALVPCGGGGH EQQHPAAAQA HVRGASRAGC STRVSKCSGA RVGSRSVGES  120
ATCGGGSDSR QTISIDTWGE REFGGPGFTS TASLISPENT ISGQDYTKTS ADDRDSVTLH  180
SGSQASHRKG DEEGRRRDNG KSSVCTKRSR AAAIHNQSER KRRDKINQRM KTLQKLVPNS  240
SKSDKASMLD EVIEYLKQLQ AQVQMMSRMN MPSMMLPLAM QQQQFQMSMM GCMGMGMGMG  300
MGVMDVPRPP FMPVPAAAAA WDNGGDCLPP PPPPVAMPDP LAALLACQSQ PMTMDAYSRV  360
AAMYQQLQQQ QQLPASKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERKRRD
2219224RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574720.0KP257472.1 Salvia miltiorrhiza clone 39 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093295.11e-112LOW QUALITY PROTEIN: transcription factor UNE10
SwissprotQ8GZ383e-63UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0H3YB300.0A0A0H3YB30_SALMI; Basic helix-loop-helix transcription factor
STRINGcassava4.1_007418m7e-98(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]