PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001118-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 352aa    MW: 38300.2 Da    PI: 8.2371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001118-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17170219255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +ykGVr +k +g++v+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  SMil_00001118-RA_Salv 170 KYKGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 219
                            8*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-27169227No hitNo description
PROSITE profilePS5103221.707170227IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20170227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-29170227IPR001471AP2/ERF domain
SMARTSM003809.7E-34170233IPR001471AP2/ERF domain
PfamPF008473.2E-10170219IPR001471AP2/ERF domain
PRINTSPR003674.4E-9171182IPR001471AP2/ERF domain
PRINTSPR003674.4E-9193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHRLHANASA ASTMLQPPPS TACHRGRSAA SPEIEHRGLL RRTVLAPHRS GVHSRLFSAA  60
THPLPVAGAL LRPRLPPAGV ANRRFSFNFL YLLLVGIFRI GKLEPFSTLL SSHGGALCHG  120
GALCQRSVCV CVCFAREKGE KREKRFGECD SHLLLRRQLR AADAAAAEQK YKGVRKRKWG  180
KYVSEIRLPN SRERIWLGSY DTAEKAARAF DAALFCLRGP SAKLNFPGDP PNISGWQALT  240
PAEIQAVAQH YGNTYSPPTP PPPPRAPELD DGASPSSNSE GAEPADSIDW SFLDVLDSDA  300
AANAGRVSDF GLFHEPVDMY MPPHLPERGG HDEDDDDDGN GGNVASSFLW NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161702271472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177KGVRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856083.14e-77ethylene-responsive transcription factor ERF017-like
TrEMBLA0A4D8Z4X11e-101A0A4D8Z4X1_SALSN; EREBP-like factor
STRINGMigut.A00330.1.p4e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-41ERF family protein