PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001124-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 242aa    MW: 27118.7 Da    PI: 9.5644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001124-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY599.1e-19102139137
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                            ++Dgy+WrKYGqK+ ++++ pr+YY+C+ + +Cpvkkk
  SMil_00001124-RA_Salv 102 VKDGYQWRKYGQKVTRDNPSPRAYYKCSLSpSCPVKKK 139
                            58**************************999******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.06297138IPR003657WRKY domain
SuperFamilySSF1182904.18E-1698143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-17100139IPR003657WRKY domain
SMARTSM007741.6E-10102151IPR003657WRKY domain
PfamPF031069.5E-15103139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQHDELIQEL SRMKWENKKL TEILAVVCRN YHDFTKIDCV EELYASKEKK NPTSCKAPAT  60
FPRLLRRRGS ARRRAGRGRL SRIPRESTCE SIRRIQASLL VVKDGYQWRK YGQKVTRDNP  120
SPRAYYKCSL SPSCPVKKKS RFTRAAQPHP SGAEIPATTA TAAAEAPAAA ANSPYLSDPT  180
ICSRIENEES EIQQVLVEQM ASSLTRNHSF TAALVAAITG RILDDGSEEN DDSYSISRVI  240
SE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231810.0KM823181.1 Salvia miltiorrhiza WRKY protein (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D5Y9D31e-103A0A0D5Y9D3_SALMI; WRKY protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.17e-34WRKY DNA-binding protein 60