PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001128-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 286aa MW: 30224.9 Da PI: 7.769

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001128-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H SMil_00001128-RA_Salv 122 YECKTCNRTFPSFQALGGHRASH 144 99**********99999998887 PP
2	zf-C2H2	10.6	0.0017	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H SMil_00001128-RA_Salv 196 HECSICGSEFGSGQALGGHMRRH 218 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.5E-13	121	146	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.78E-8	121	144	No hit	No description
PROSITE profile	PS50157	11.843	122	149	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	122	144	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	124	144	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.78E-8	191	218	No hit	No description
PROSITE profile	PS50157	10.575	196	223	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.2E-11	196	220	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.048	196	218	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MMKLEMLEEF SGCSDQNTIV KGKRTKRPRP SSSTSSNGGA AEFCNSFASS PTTSSGISTS 60 TEEDEDMANC LILLARGDSP PQPQKIKTTA PAAAAAEESK FSSRKFAEMA TTSAGKVGIY 120 VYECKTCNRT FPSFQALGGH RASHKKPKPA AETDQRKSPP AAADGQEEGG GKELRKLTAI 180 SPPPATQSDP NKPKMHECSI CGSEFGSGQA LGGHMRRHRP APPPPSAGAR TPASVDENTT 240 SHEAAEKARN LLALDLNLPA PLEDEKLPPP PPHVVFSAAA LVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	29	KRPRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089966.1	1e-106	zinc finger protein ZAT5-like
TrEMBL	A0A4D9A835	1e-140	A0A4D9A835_SALSN; Uncharacterized protein
TrEMBL	A0A4D9AYX3	1e-140	A0A4D9AYX3_SALSN; Uncharacterized protein
STRING	Migut.N02543.1.p	2e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-37	C2H2 family protein