PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001178-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 506aa    MW: 55988.6 Da    PI: 9.4933
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001178-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like925.1e-29276329154
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                            k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ Y 
  SMil_00001178-RA_Salv 276 KARRCWSPDLHRRFVNALHMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQTYN 329
                            68***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.273273333IPR017930Myb domain
SuperFamilySSF466895.55E-15273334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-25274333IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-23276329IPR006447Myb domain, plants
PfamPF002491.2E-6278328IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
LQSPNLIDKN ESAYRVFLVL DIPLHDSTVI PSTRSSHTES KEDCLIYVID QEMMASPSEL  60
SFDCKPQIYS MLPKSFGDQA SEHTQKLEEF LGRLEEERLK IDAFKRELPL CMQLLSNAME  120
ASRQQLQSER ASQGGRPVLE EFIPLKTSNS SSVEIGEGNM SADKANWMTS AQLWNQESEG  180
AKAPQSPLTS PQETDIKLAL NCKQRVNGGG AFLPFSSKDR ASSPSGEAYP ELALASSHKE  240
EKRSSSETKR ESAGKCSVEK EQACGTATNG SQTHRKARRC WSPDLHRRFV NALHMLGGSQ  300
VATPKQIREL MKVDGLTNDE VKSHLQTYNL WFKNKTKTLK FVKAEIPTSH SKAQPEPTSG  360
GHGGPSGGGP RWHMGPARIR RRRRRTRRGT GPLRSAPRHH PPRVAALLLP KPADAARHVP  420
RHSSPPNHQL HHHQQLHFYN KQPPVTQRNS SPESDVRGGG GDPSESIEDG KSESGSWKAD  480
SGGDNSGERR RVEGEESNAS VVSLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377384RIRRRRRR
2379386RRRRRRTR
3379387RRRRRRTRR
4380385RRRRRT
5380387RRRRRTRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028753830.11e-128myb family transcription factor EFM-like
RefseqXP_028800631.11e-128myb family transcription factor EFM-like
SwissprotQ9ZQ855e-82EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A4D8XRP11e-153A0A4D8XRP1_SALSN; Uncharacterized protein
STRINGevm.model.supercontig_127.551e-125(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-73G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]