PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001196-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 292aa MW: 32952.6 Da PI: 5.0486

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001196-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.7	3.8e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelv +yL +k++g ++el evi+evd+yk+ePwdLp k + +++ ewyf+ +rd+ky++g+r+nrat+sgyWkat SMil_00001196-RA_Salv 6 LPPGFRFHPTDEELVAYYLDRKINGGTIEL-EVIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYGPRDRKYPNGSRTNRATRSGYWKAT 92 79**************************.99**********96435566888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v+s ++++vg+kktLv+y+grap+g++tdWvmheyrl SMil_00001196-RA_Salv 93 GKDRTVHS-QKRAVGMKKTLVYYRGRAPHGVRTDWVMHEYRL 133 ****.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.01E-63	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	60.071	6	154	IPR003441	NAC domain
Pfam	PF02365	7.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGPMTLPPGF RFHPTDEELV AYYLDRKING GTIELEVIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYGPR DRKYPNGSRT NRATRSGYWK ATGKDRTVHS QKRAVGMKKT LVYYRGRAPH 120 GVRTDWVMHE YRLIDSVSTS TLKDSYALCR VLKKNIVITK TSKQESGVIW DDDSTPETSA 180 KQTEGSSSDV TQTTPGVAVV SSTPQIASDE VNSSIVDQFY YDATQNISDF NIQDYTGIFY 240 ESWYPALGVD DFPQIDHLSG DHVASDRCLN GIATLDEIYA VCSTHDNYAG SN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-57	4	155	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-57	4	155	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-57	4	155	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-57	4	155	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-57	4	155	18	169	NAC domain-containing protein 19
3swm_B	5e-57	4	155	18	169	NAC domain-containing protein 19
3swm_C	5e-57	4	155	18	169	NAC domain-containing protein 19
3swm_D	5e-57	4	155	18	169	NAC domain-containing protein 19
3swp_A	5e-57	4	155	18	169	NAC domain-containing protein 19
3swp_B	5e-57	4	155	18	169	NAC domain-containing protein 19
3swp_C	5e-57	4	155	18	169	NAC domain-containing protein 19
3swp_D	5e-57	4	155	18	169	NAC domain-containing protein 19
4dul_A	4e-57	4	155	15	166	NAC domain-containing protein 19
4dul_B	4e-57	4	155	15	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095829.1	1e-152	NAC transcription factor 29
Swissprot	Q9FFI5	6e-85	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A022QM93	1e-133	A0A022QM93_ERYGU; Uncharacterized protein
STRING	Migut.M01499.1.p	1e-134	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	5e-97	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]