PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001261-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 227aa    MW: 26249.3 Da    PI: 9.8935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001261-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.44e-34151501128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkr 73 
                            lp GfrFhPtdeel+ +yLk+kv   +l++ +vi+e++ ++++PwdLp                 +++ +++ yfF+kr+++  +   
  SMil_00001261-RA_Salv  15 LPIGFRFHPTDEELLLHYLKRKVLCLPLPA-TVIPELEAFHFNPWDLPGyllflfahfmvfyfqDLSELKEKRYFFCKRKRNLMN--- 98 
                            699***************************.99***************5589999999988765444455678******997643... PP

                    NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             + +t+ gyWk++gk k+++ + +++++g+kk++vfy+ r+   +kt+W+m+e++l
  SMil_00001261-RA_Salv  99 -KCSTDCGYWKSSGKGKQIVGAeTNNVIGMKKSFVFYQDRK---SKTQWIMQEFSL 150
                            .447899************99867788**********6554...46********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-3713178IPR003441NAC domain
PROSITE profilePS5100541.415178IPR003441NAC domain
PfamPF023651.8E-2416150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MERARSEGEN GGVKLPIGFR FHPTDEELLL HYLKRKVLCL PLPATVIPEL EAFHFNPWDL  60
PGYLLFLFAH FMVFYFQDLS ELKEKRYFFC KRKRNLMNKC STDCGYWKSS GKGKQIVGAE  120
TNNVIGMKKS FVFYQDRKSK TQWIMQEFSL VGFLKTPLLN QRVAMQVGDW VVCRLFQRKR  180
RPRNHSNNSK NELGVSIAQT TSCSSGITHI SCSDLDQEAS SRSATFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-3051795169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844037.11e-82PREDICTED: NAC domain-containing protein 68
TrEMBLA0A022QZ793e-81A0A022QZ79_ERYGU; Uncharacterized protein
STRINGMigut.F00031.1.p5e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-39NAC domain containing protein 83