PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001264-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 231aa MW: 24911.1 Da PI: 8.8326

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001264-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H SMil_00001264-RA_Salv 81 FSCNYCRRKFYSSQALGGHQNAH 103 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.59E-6	78	108	No hit	No description
PROSITE profile	PS50157	11.385	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MMPPNLNMES EDESEVSSQV ASNASVYSKE ESRNASSCLD DSFKPVVLDL TLGINGCGEP 60 DLKVPTEAVA NHPPPPSSRV FSCNYCRRKF YSSQALGGHQ NAHKRERTLA KRAMRMEMFS 120 DRYASLASLP LHGSAFRSLG IQAHASMHPE HGIRGGGGGG GGVVAELGLL IKATSDCPSI 180 WSTMKGSCRG REASDKWRAS GETRPSTLGS APIWRKGQLH LRGQTSHPFL T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070525.1	2e-64	zinc finger protein 4
Refseq	XP_011070527.1	2e-64	zinc finger protein 4
Refseq	XP_011070528.1	2e-64	zinc finger protein 4
Refseq	XP_011070529.1	2e-64	zinc finger protein 4
Refseq	XP_011070530.1	2e-64	zinc finger protein 4
Refseq	XP_011070531.1	2e-64	zinc finger protein 4
TrEMBL	A0A4D9A7Z2	8e-88	A0A4D9A7Z2_SALSN; Uncharacterized protein
STRING	PGSC0003DMT400075895	1e-56	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-28	zinc finger protein 4