PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001316-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Whirly
Protein Properties Length: 226aa    MW: 25365.6 Da    PI: 8.9691
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001316-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly2095.2e-65501871138
                 Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneG 88 
                            svyk+kaal+v+++ p+f+ ldsg++kl+++G +ll++a+a ++r+ydW++kq+f+ls+te++++++l++ +sceffhdp +++s+eG
  SMil_00001316-RA_Salv  50 SVYKGKAALTVEPRPPEFSPLDSGAFKLSKEGYVLLQFAPASGVRQYDWSRKQVFSLSVTEIGHIISLGASNSCEFFHDPNKGKSDEG 137
                            79************************************************************************************** PP

                 Whirly  89 kvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                            +vrk+lkvePlpd sG+f+nlsv+n++++++e++++P++kaefavl s +
  SMil_00001316-RA_Salv 138 RVRKVLKVEPLPDSSGHFFNLSVQNKITNVDEKIYIPITKAEFAVLVSSF 187
                            **********************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.8E-7938210IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.85E-7643220IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.3E-6151184IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVIHSVCAGR GGGYLTPQDQ NHEQQKFTPY DSRFPSQPGQ FPPRVYVGYS VYKGKAALTV  60
EPRPPEFSPL DSGAFKLSKE GYVLLQFAPA SGVRQYDWSR KQVFSLSVTE IGHIISLGAS  120
NSCEFFHDPN KGKSDEGRVR KVLKVEPLPD SSGHFFNLSV QNKITNVDEK IYIPITKAEF  180
AVLVSSFNFV LPYLLGWHTF ANSIKPEDAN RLNSTNPRSS DFEWTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1123922432218p24: plant transcriptional regulator PBF-2
1l3a_B1e-1123922432218p24: plant transcriptional regulator PBF-2
1l3a_C1e-1123922432218p24: plant transcriptional regulator PBF-2
1l3a_D1e-1123922432218p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087065.21e-139single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-113WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A4D8Z9F41e-138A0A4D8Z9F4_SALSN; Uncharacterized protein
STRINGMigut.L01333.1.p1e-135(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-108ssDNA-binding transcriptional regulator