PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001369-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 221aa    MW: 24960.2 Da    PI: 7.1286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001369-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-0953104154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            +++ah   Er+RR+++   ++ Lr+llP       ++K   ++   +Av+Y++++
  SMil_00001369-RA_Salv  53 KKTAHRFTERQRRQEMSALYASLRSLLPLqY---VKGKRAVSDHMHQAVNYVNDM 104
                            799**************************66...9999999**********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-1249119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-950123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.90352104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-752109No hitNo description
PfamPF000101.9E-653104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.415145221IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLPISSDGVS EDPSIFLELE DLLADCPIPD GNQNTVKKSS ASSQVEENNQ DSKKTAHRFT  60
ERQRRQEMSA LYASLRSLLP LQYVKGKRAV SDHMHQAVNY VNDMKKNIEQ LQKRRDKLRN  120
ITTSADPTTP RCVKINLFKD GMEILITHSL SNKSFPLSKV LAYLLDRQLN VVHCVSTTTA  180
PSTFLQTIHI ELNDSSSVNL PELQERLDNL IRFAYTAADD S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575250.0KP257525.1 Salvia miltiorrhiza clone 92 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076269.14e-66transcription factor bHLH36-like
TrEMBLA0A0H3YC611e-162A0A0H3YC61_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.F01201.1.p2e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.14e-31bHLH family protein