PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001370-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 238aa    MW: 27199.9 Da    PI: 9.8645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001370-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1269120154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            rr+ h  +Er+RR+++ + +  Lr+llP      +++K s ++  e+A++YIk++
  SMil_00001370-RA_Salv  69 RRVLHRDIERKRREEMSKLYVSLRTLLPMeH---NKGKSSVSDQMEEATKYIKQM 120
                            7999*************************66...*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1367136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.61168120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-868125No hitNo description
Gene3DG3DSA:4.10.280.109.1E-1269138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-1069120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-674126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
LRSKLNMFSF QPCDELPFPI QTTPQNYQIS EGNLISFSAT TTKEEQLIGA SNSRSPKQKG  60
QIRYGSYNRR VLHRDIERKR REEMSKLYVS LRTLLPMEHN KGKSSVSDQM EEATKYIKQM  120
HEKIEKLRSQ RDKLKKLHNS SSSSCGTNVE SSYDRNGLHN SVAVQRVMDG LEILITNKSP  180
QFELSHVLAQ LSERELDVVS CVSTTTNGGF LHKILIKASN RTCLDVWGLH DRLSDTIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERKRRE
2131136DKLKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575260.0KP257526.1 Salvia miltiorrhiza clone 93 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0H3Y7L91e-172A0A0H3Y7L9_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.15e-25bHLH family protein