PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001383-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 377aa MW: 43117.6 Da PI: 4.2623

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001383-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.8	7.6e-15	146	227	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+L++a ++ + +r++l+ W+ev++k+ + ++er+ +qC+++++ l+k+ykk+k ++ s+++yf++++ SMil_00001383-RA_Salv 146 WTEHETLVLLDAWGDRFLKHGRKSLRSEEWQEVAEKVsQGSKIERTDTQCRNRLDTLKKKYKKEKMKFGDF----GSEWVYFKKID 227 ***********************************555678******************999984....668***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-22	145	229	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-5	145	211	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.446	146	203	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MMDDEDDVTY RSDTYTANGQ KFPVENASYP RDVGNSYGED DDNDDDDDEE DDEKAINDVD 60 DEDEDDDDDD DGGNGVQRIS NNEYEYGDED DNNDDDNGDQ QRHPKKRKLK NLISSYEFAP 120 RLPAPPPAAP SAPKPSYGGR NPLTDWTEHE TLVLLDAWGD RFLKHGRKSL RSEEWQEVAE 180 KVSQGSKIER TDTQCRNRLD TLKKKYKKEK MKFGDFGSEW VYFKKIDALL SSSQVQQTGL 240 SCGIDSGEYV FMNPKVYLNR SNGLDEMRDS PGNSTEGEED ESEGLPPKKT TRNGKIRGSA 300 ASFKMLADSF HKFSEIYERI EDSKRQQMVE LEKMRMDFHR DLELQKREIL ERGQAEIAKI 360 RQGEDEENTA SAENMSG

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MMDDEDDVTY RSDTYTANGQ KFPVENASYP RDVGNSYGED DDNDDDDDEE DDEKAINDVD  60
DEDEDDDDDD DGGNGVQRIS NNEYEYGDED DNNDDDNGDQ QRHPKKRKLK NLISSYEFAP  120
RLPAPPPAAP SAPKPSYGGR NPLTDWTEHE TLVLLDAWGD RFLKHGRKSL RSEEWQEVAE  180
KVSQGSKIER TDTQCRNRLD TLKKKYKKEK MKFGDFGSEW VYFKKIDALL SSSQVQQTGL  240
SCGIDSGEYV FMNPKVYLNR SNGLDEMRDS PGNSTEGEED ESEGLPPKKT TRNGKIRGSA  300
ASFKMLADSF HKFSEIYERI EDSKRQQMVE LEKMRMDFHR DLELQKREIL ERGQAEIAKI  360
RQGEDEENTA SAENMSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072329.1	1e-162	trihelix transcription factor ASIL1-like
Refseq	XP_011072330.1	1e-162	trihelix transcription factor ASIL1-like
TrEMBL	A0A4D9BF00	0.0	A0A4D9BF00_SALSN; Uncharacterized protein
STRING	XP_009609888.1	1e-147	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	8e-71	Trihelix family protein