PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001415-RA_Salv
Common NameMYB42
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 310aa    MW: 35345.2 Da    PI: 6.2629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001415-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-191259148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd  lvd+++++G g+Wk  ++  g++R++k+c++rw +yl
  SMil_00001415-RA_Salv 12 KGPWTPEEDRMLVDCIQKHGHGSWKELPKLAGLNRCGKSCRLRWTNYL 59
                           79********************************************97 PP
2Myb_DNA-binding52.89.4e-1765108146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++T eE+  ++d++++lG++ W+ Ia++++ gRt++++k++w++
  SMil_00001415-RA_Salv  65 RGAFTDEEERVIIDLHAELGNK-WSVIASYLP-GRTDNEIKNFWNT 108
                            89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.781759IPR017930Myb domain
SuperFamilySSF466897.19E-339106IPR009057Homeodomain-like
SMARTSM007176.4E-161161IPR001005SANT/Myb domain
PfamPF002492.7E-171259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241366IPR009057Homeodomain-like
CDDcd001673.26E-121459No hitNo description
PROSITE profilePS5129426.36260114IPR017930Myb domain
SMARTSM007175.5E-1664112IPR001005SANT/Myb domain
PfamPF002493.9E-1565108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2767114IPR009057Homeodomain-like
CDDcd001671.61E-1167110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEMTTEENGL KKGPWTPEED RMLVDCIQKH GHGSWKELPK LAGLNRCGKS CRLRWTNYLR  60
PDIKRGAFTD EEERVIIDLH AELGNKWSVI ASYLPGRTDN EIKNFWNTRL KKKLLRNGID  120
PDTHMPRTHL DTLLPVLPQL LSYNSSRNLT WEGIVRSQED AARLAKVLLV GNILQLLNTG  180
TTSVLPPVAM ETFSPSLGSA QVTNRPPWDS HMMGLQLERF TQKPEFDALT CQPSFKDALR  240
PVFQNTMETN NVMDINSNKF GESSNMTQIM NLAEFSNPPT TSEALEDILM DDEASNYYWK  300
RVLDQARLSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-301011425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593960.0KF059396.1 Salvia miltiorrhiza MYB-related transcription factor (MYB42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634006.12e-93PREDICTED: transcription factor MYB39
SwissprotQ9S9Z22e-68MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A059PRR10.0A0A059PRR1_SALMI; MYB-related transcription factor
STRINGVIT_16s0039g01710.t016e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-74myb domain protein 9
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]