PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001418-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HSF

Protein Properties

Length: 508aa MW: 56370.2 Da PI: 5.1365

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001418-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.5	1.6e-36	18	110	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y++++d++++ ++sws+n+nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g SMil_00001418-RA_Salv 18 FLSKTYDMVDDPATDAVVSWSKNNNSFVVWNVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 96 9**************************************************************999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +k+ll++i+r+k++ SMil_00001418-RA_Salv 97 RKHLLKTINRRKTS 110 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.7E-39	11	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.36E-35	13	107	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.6E-62	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.1E-32	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-20	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-20	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-20	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MEAGGGGIST AATSPPPFLS KTYDMVDDPA TDAVVSWSKN NNSFVVWNVP EFARDLLPKY 60 FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGRKHL LKTINRRKTS HAQGQQQNVQ 120 VQNPSVPSCI EVGKFGIEEE VERLKRDKNL LMQELVRLRQ QQQSTDSQLQ TVGQRVHVME 180 QRQTQMMSFL AKAMQSPGFV SQLVHQQNDS GRHISGANKK RRLPNQDEES LARKLSITSP 240 DGQIVKYQPL MNEAAKAMLR QIMKMNTSNR PESKLSNPNG FLIDSAHPPS DLIDSSSSSS 300 RISGVTLSEV LPNTSTLSEV QSSSCLTHAS AHNPLFPEAS TGLPDFIQAQ GISPGNSIDP 360 PNGPFKGSEP TSFSSVDALP GFVDAPIPPP SDEPLEDYDV DILLDDIHKL AAMDDDIHKL 420 SSMSDDIHKM PGISDDIHKL PGINDVFWEQ FLPESPLIEK TDEISTVDLG HEMSTDQLIE 480 LESEWDRLKS LNNLTEQMGL LASSAKIG

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MEAGGGGIST AATSPPPFLS KTYDMVDDPA TDAVVSWSKN NNSFVVWNVP EFARDLLPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGRKHL LKTINRRKTS HAQGQQQNVQ  120
VQNPSVPSCI EVGKFGIEEE VERLKRDKNL LMQELVRLRQ QQQSTDSQLQ TVGQRVHVME  180
QRQTQMMSFL AKAMQSPGFV SQLVHQQNDS GRHISGANKK RRLPNQDEES LARKLSITSP  240
DGQIVKYQPL MNEAAKAMLR QIMKMNTSNR PESKLSNPNG FLIDSAHPPS DLIDSSSSSS  300
RISGVTLSEV LPNTSTLSEV QSSSCLTHAS AHNPLFPEAS TGLPDFIQAQ GISPGNSIDP  360
PNGPFKGSEP TSFSSVDALP GFVDAPIPPP SDEPLEDYDV DILLDDIHKL AAMDDDIHKL  420
SSMSDDIHKM PGISDDIHKL PGINDVFWEQ FLPESPLIEK TDEISTVDLG HEMSTDQLIE  480
LESEWDRLKS LNNLTEQMGL LASSAKIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	9e-27	16	110	18	123	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084620.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-157	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A4D9A0V0	0.0	A0A4D9A0V0_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.F00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-132	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]