PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001566-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 258aa    MW: 29269.7 Da    PI: 8.4538
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001566-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32140197259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s+fprsYY+Cts++C+vkk +ers ed ++v++tY g+Hnh+
  SMil_00001566-RA_Salv 140 EDGYRWRKYGQKAVKNSPFPRSYYKCTSQKCSVKKLIERSYEDSTMVITTYLGRHNHH 197
                            8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-33124199IPR003657WRKY domain
SuperFamilySSF1182903.01E-28131199IPR003657WRKY domain
PROSITE profilePS5081130.882134199IPR003657WRKY domain
SMARTSM007742.0E-36139198IPR003657WRKY domain
PfamPF031062.0E-24140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSFSSKNKIE DRSSPMSDAD NYKMGSQEGL QFSFLADHTS FMYNHPKQQN PSDTMSFFYN  60
TPSPSPAFDP SCSSSEPPLF AVNKNLGENP NSSEAAAVEE ADSCPKHCKA GDLKPKKVKE  120
KKAREARFAF VTKSEVDNLE DGYRWRKYGQ KAVKNSPFPR SYYKCTSQKC SVKKLIERSY  180
EDSTMVITTY LGRHNHHSPA TLRGRAAVLP PPLQPQFGFH NFPENYFTSI HPNFPQLEIN  240
PQFLADQFNM DSSFLQHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-251322001078Probable WRKY transcription factor 4
2lex_A4e-251322001078Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231370.0KM823137.1 Salvia miltiorrhiza WRKY protein (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098088.11e-54probable WRKY transcription factor 71 isoform X1
TrEMBLA0A0D5YA050.0A0A0D5YA05_SALMI; WRKY protein
STRINGMigut.M00487.1.p5e-50(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-42WRKY DNA-binding protein 71