PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001622-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

YABBY

Protein Properties

Length: 191aa MW: 22189.6 Da PI: 5.7406

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001622-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	62.5	1.8e-19	24	96	4	76
YABBY 4 fssseqvCyvqCnfCntil.avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk 76 ++ eq+Cyv+C fCntil +vsvP +sl +vv +rCGhC +++s+n+ + l + +l+ e++++e++ SMil_00001622-RA_Salv 24 HDLQEQICYVKCCFCNTILlVVSVPCSSLAMVVRIRCGHCDNIFSLNMLHLFPSLHQMPDLEV-CDEKVADEEE 96 6789***********97368*********************998877655555555433.2333443333 PP
2	YABBY	87.5	3.5e-27	94	159	102	166
YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +e+ede+ + + +PPek+qr+P+ayn fik ei+r+k + P+i+h++afsaaaknWah P+ SMil_00001622-RA_Salv 94 EEEEDEDYVWCNQvIHKPPEKKQRAPTAYNHFIKYEIRRLKLQHPNITHKQAFSAAAKNWAHCPQS 159 45566666666674789***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.3E-41	27	160	IPR006780	YABBY protein
SuperFamily	SSF47095	1.09E-7	106	160	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-5	110	160	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
LLHCILVNFP FNSLSLIKKM STLHDLQEQI CYVKCCFCNT ILLVVSVPCS SLAMVVRIRC 60 GHCDNIFSLN MLHLFPSLHQ MPDLEVCDEK VADEEEEDED YVWCNQVIHK PPEKKQRAPT 120 AYNHFIKYEI RRLKLQHPNI THKQAFSAAA KNWAHCPQSE YRDGEVYGCD EGDRDMVMQW 180 TVDDEVIIGI Y

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087090.1	6e-66	axial regulator YABBY 4
Swissprot	Q9LDT3	2e-38	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2G9GYG9	3e-59	A0A2G9GYG9_9LAMI; Uncharacterized protein
STRING	Migut.L01462.1.p	5e-55	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-37	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]