PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001663-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 126aa MW: 14336.7 Da PI: 8.4704

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001663-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F ++ L H++ H SMil_00001663-RA_Salv 66 FECQYCLKVFVNSQALGGHQNAH 88 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-4	62	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.26E-7	62	93	No hit	No description
Pfam	PF13912	1.4E-6	66	90	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.094	66	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MGKNSVSAWS QENSNSNKKL KLFGVEVEQF DDDDNSKGGW LEGDESVNSS GSSTVTDKPE 60 AEDKKFECQY CLKVFVNSQA LGGHQNAHKK ERLRKKRLQL QARKASINCY IQPFYYNNNQ 120 NSDRHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087078.1	2e-52	zinc finger protein 5
TrEMBL	A0A4D8Z9A9	1e-57	A0A4D8Z9A9_SALSN; Uncharacterized protein
STRING	XP_008244960.1	7e-37	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5136	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-11	C2H2 family protein