PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001912-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 68aa    MW: 7457.34 Da    PI: 10.9764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001912-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-091445132
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                           rg+W++eEd++l   v ++G ++W++ +   g
  SMil_00001912-RA_Salv 14 RGAWSKEEDDRLRAFVSEFGHNNWRLLPLLAG 45
                           89***********************9887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.63968IPR017930Myb domain
SuperFamilySSF466896.43E-8943IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-101246IPR009057Homeodomain-like
PfamPF002493.7E-71445IPR001005SANT/Myb domain
CDDcd001673.55E-61646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MVKPPTFDSN GMKRGAWSKE EDDRLRAFVS EFGHNNWRLL PLLAGGPPSL GSSPGEPTTR  60
SRTTGTRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0595431e-69KF059543.1 Salvia miltiorrhiza MYB-related transcription factor (MYB79) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852362.17e-17PREDICTED: transcription factor MYB34-like
TrEMBLA0A059PRF37e-24A0A059PRF3_SALMI; MYB-related transcription factor
TrEMBLA0A075BMG07e-24A0A075BMG0_SALMI; MYB-related transcription factor
TrEMBLW8SLK86e-24W8SLK8_SALMI; Transcription factor mybp
STRINGMigut.M00366.1.p3e-16(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-08myb domain protein 63