PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002052-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 397aa MW: 43596.1 Da PI: 10.7318

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002052-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.1	2.7e-14	59	148	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+++ +++Liea +l+rg+l++++W++v++++ + +++r+ qCk++++ +k+yk +k + + + + +p+f++l SMil_00002052-RA_Salv 59 CWSEEATRTLIEAWGAQYLHLNRGNLRQQHWRAVADAVnaaHNAKLRRTDAQCKNRIDTTKKKYKIEKSKAVQSGGRYVPAWPHFHSL 146 7***********************************9988999******************9999998889999*****9 PP trihelix 86 ea 87 +a SMil_00002052-RA_Salv 147 DA 148 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-23	57	149	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MSSQPSPSPP PSPSPSPRRL PSDNENPAPT ASPAKPDSPS GPPSPPPQKT PAFPSREDCW 60 SEEATRTLIE AWGAQYLHLN RGNLRQQHWR AVADAVNAAH NAKLRRTDAQ CKNRIDTTKK 120 KYKIEKSKAV QSGGRYVPAW PHFHSLDALI GDSFSKTAAA AVNVNAGHSK NLRRRISPPP 180 EISPSPSPSP SPEPFPSGRK VSPAIRRPSR DPAVGQLLSL PWSVPVGPRS KRSGPGSVTE 240 RNFSVMAAAA AAMEAEQDEE YYDNDPEDES GGGRRRRPAA GRKRKAAERT GLREGYRMLA 300 AAIMSLGETY EKVEVAKQRQ MVEFEKQRMQ FAKDLELLRA QVQLDNLKRV QCTSQNTFAL 360 QRVSSSDSTL VRPIQRPARL MRQLLVDVGA RFGSDGL

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MSSQPSPSPP PSPSPSPRRL PSDNENPAPT ASPAKPDSPS GPPSPPPQKT PAFPSREDCW  60
SEEATRTLIE AWGAQYLHLN RGNLRQQHWR AVADAVNAAH NAKLRRTDAQ CKNRIDTTKK  120
KYKIEKSKAV QSGGRYVPAW PHFHSLDALI GDSFSKTAAA AVNVNAGHSK NLRRRISPPP  180
EISPSPSPSP SPEPFPSGRK VSPAIRRPSR DPAVGQLLSL PWSVPVGPRS KRSGPGSVTE  240
RNFSVMAAAA AAMEAEQDEE YYDNDPEDES GGGRRRRPAA GRKRKAAERT GLREGYRMLA  300
AAIMSLGETY EKVEVAKQRQ MVEFEKQRMQ FAKDLELLRA QVQLDNLKRV QCTSQNTFAL  360
QRVSSSDSTL VRPIQRPARL MRQLLVDVGA RFGSDGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550151.1	1e-108	trihelix transcription factor ASIL2
TrEMBL	A0A4D8XT01	1e-118	A0A4D8XT01_SALSN; Uncharacterized protein
STRING	Migut.M00262.1.p	4e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-23	sequence-specific DNA binding transcription factors