PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002252-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 226aa    MW: 24227 Da    PI: 6.6366
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002252-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.3e-302178359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                           D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ +Hnh+
  SMil_00002252-RA_Salv 21 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTTLLITYSCNHNHP 78
                           99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-311180IPR003657WRKY domain
PROSITE profilePS5081131.6171480IPR003657WRKY domain
SuperFamilySSF1182901.44E-251480IPR003657WRKY domain
SMARTSM007744.5E-341979IPR003657WRKY domain
PfamPF031067.0E-252178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVPIGDGDGS RSKAEVYPPP DSWSWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS  60
RLDPTTLLIT YSCNHNHPLP TTTKNHHHHH HHHQNPPLPA TTASPAAKPA ITSSSSDTAS  120
PPPAASFPPE ECAASSHQPD IEPCPADNGF VELAGEFGWL CNVGPTIMDG ATLVGPTWGA  180
QADVEFSTPI GEEDKLLFGD LGDLPESAMV FRRHRVEAPC CAGGTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-1921811880Disease resistance protein RRS1
5w3x_D3e-1921811880Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837543.11e-105PREDICTED: probable WRKY transcription factor 69
TrEMBLA0A2G9HZX01e-103A0A2G9HZX0_9LAMI; Uncharacterized protein
STRINGMigut.M00241.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.25e-39WRKY DNA-binding protein 69